I have recently bought Michael Blank's, Syndicated Deal Analyser (SDA), but was wondering what other programs or software anyone would suggest to analyze an initial deal? 

get a blank copy of them, they are a template where they fill in the blanks.  

Make notes of such issues and address them with your attorney in drafting the OA.I think for the cost involved, getting a blank form OA isn't really a value, I suspect much of it defaults to state law and won't allow the flexibility that can be devised that later on can save you thousands.

Be ready with a blank check copy to use for your EMD.

San jose is still moving upward im sure as thats where most the new company move it to...but i think its becoming to crunched and its slowing down...while milpitas is like nearly a blank canvas ...or at least an old one with looks of room for improvement s...and still elbow room to breathe...its still young in otherward..and i get the feeling with the bart the twin towers and the endless new apartments...milpitas is tranforming its self the way san jose did in the early 90's...which as i stated did well san jose was on the verge of bankrupcy back then .if i had money to put on one or the other ...i would , even with the new campuses going in in san jose, i would still pit my money on milpitas ...due to it younger and can handle more change then san jose can.

I would check our Michael Blank SDA it will help you learn the underwriting process. 

Yeah, I have my op agreement that my attorney helped and I've done 'fill in the blank' with my new LLC name since. 

Michael Blank, with some training modules (https://themichaelblank.com/syndicated-deal-analyzer/)2.

Jake & Gino or Joe Fairless or Michael Blank or Vinney Chopra's or Brad Sumroks Foundations. 

@Michelle Kessler  "Emerging Real Estate Markets", "Multifamily Millions", "Crushing it in Apartments", "The Best Ever Apartment Syndication Book", "Wheel Barrow Profits" and Michael Blank has a good one as well