For payment of the loan amounts, do I need to have him make out two separate checks/transfers each month or can one check be deposited into the Traditional account and then immediately transfer the appropriate amount to the Roth account (based on % of initial loan amount)? 

If it's an excise tax every time title transfers, then you'll have what WA does (1.7%) and Philly does (4%). 

I am interested in transferring my 401(k) from my previous company into a Self-Directed 401(k) - NOT a Self-Directed IRA - for the purpose of investing in cash flowing rental properties.

For example, I have seen some properties in Indiana where taxes doubled within the last year and there was no transfer of ownership.

The money is transferred to another escrow account where it is transferred to the lender to make the payment on the loan.

I personally own (but will transfer deed to a SMLLC) a NJ condo that I rent out but would like to utilize a 1031 exchange to pick up a few smaller rental properties.  

He agrees with this assessment and is eager to get an LLC formed in NY and the deeds transferred over to it. 

The transfer just happened a week ago.

I already have Lexington Law and have written many letters , Wells Fargo even wrote an somewhat admittance of guilt letter but will not fully admit the correlation between them closing my account temporarily and me not being able to transfer funds to other accounts to make payments . 

It's not hard (but is extra work as I end up producing a unique letter per offer) to temporarily transfer balances around to produce a proof of funds letter close to the asking price, but I'm looking to streamline where I can.