After rereading the contract, the seller acceptance date was 6 days ago, not 9, and the 2nd day after their acceptance I did in fact walk through the property myself and take pictures of ceiling damage, roof damage, and other issues.

If you were not working with an agent, that could have done a lot of damage to your offer, at least as far as the seller is concerned. 

They blame the cleaners but as an owner I’d like to make sure we are aware of damages.

These caused damage that couldn't be seen in my inspection of the MH.  

It might sound unreasonable but if you stepped on the agent's sensitive toe, then containing the damage is important.

Please note that windows damage is usually tenants responsibility unless otherwise is written in the contract.

The damage is $500 for a 3 mth listings.  

In addition, there are separate legal requirements for handling a security deposit, the failure to satisfy any one of which subjects the landlord to TRIPLE damages if it is raised in court.I just did a quick check for NY, and it appears there is no statute in regard to prepaid rent:NY Rental LawsBUT, when it comes to landlord-tenant law, it pays not to assume anything, so I'd strongly recommend contacting an attorney for a definitive answer.

If bank is claiming 80% and no tenant seasoning on a bunch of new tenants to increase occupancy then you need to assume they will default and damage will happen to the units.

However when it comes to condos HOA takes care of these things:maintain all structures, such as patching damaged roofs and siding, for example.