One housing authority wouldn’t even entertain the request, while another was open to it because it was an affordable housing property, requiring just an application for the exemption.From my experience, dealing with government agencies, especially when trying to save money or get financial benefits, can be a slow process.

I'd really appreciate any insights or resources from those of you who have been through this process.

Give it a read, and you'll have a fair understanding of the process. 

The process from start to finish would take four months and cost ~200k to build, with comps in the area around 355k-lender man said, refinancing would take six months as most lenders wont refinance a property unless its been built for six months, affecting the strategy to get paid out from refinancing quicker and closing out on construction loan-The property would not appraise at comps value, but at the cost it took to build, affecting getting paid out from the refinance.

We have created work instructions for every step of the process so we can maintain consistency in how we evaluate properties, communicate with tenants, market our properties, handle rent increases, manage property turnover, etc..... 

He is by far my most successful protege, but my second most successful is doing quite well and then I have a few who are making process to doing well. 

For first flips better to start with a  small cosmetic rehab  until you get to know the process and the team well.

Experienced developers, could you tell me how the process/financing works?

You'll typically need to set up your account and get familiar with the process of working with the local housing authority.

Quote from @Daniel Windingstad: Quote from @Obed Calixte: Some people have the personality, processes and systems & time to self manage, some do not.