I established an LLC for our rental property, but not to hold title or get a loan.Mainly for bookkeeping, and as a "management" company.

You can technically bookkeep it separately but it will be much easier to monitor and manage.Most of the cases, one bank to receive rent and pay expenses for the property which means one financial state per property.

Stessa for diy book keeping.

Also do the bookkeeping.

I did all the bookkeeping (recurring and one-time operation cost, initial cost of furnishing and house improvements, etc.) 

On my bookkeeping I don't claim ANY flip expenses until I claim flip income.

You should also get your bookkeeping and accounting for each property before you get advice.

Folio3: This system is built off Oracle Net Suite but seemed limited as it doesn't have a way to market properties and push them to online websites such as Zillow, Zumper, etc... we could pay to have an integration built but that may not be cost effective.

I'm also in school so my plate is full with homeschooling our kids, my own school and my husband runs our business and I do the books and have a couple side bookkeeping clients!

The main areas I am wanting to organize are my existing leads and their statuses of importance, where are my deals under contract in the process and what tasks need to be completed, and overall bookkeeping for income and expenses.