Cory, I am have been a loan officer for 8 years and investor for 5. I did something similar to what you are doing, but with a multifamily with established cash flows earlier in the year.
I acquired a 4 unit property, using FHA financing, I live in one unit, rent out the other three while having an established LLC to distribute cash flow.
What you are trying to avoid is the "Due on Sale Clause" of the mortgage. Go to this link if you would like a more comprehensive explanation of the "Due on Sale Clause"... http://www.creonline.com/beat-the-due-on-sale-clause.html .
In my lending career, I have dealt with countless homes that are deeded to to a trust or other entity, and other than having to deed the property out of the trust's or entity's name back to yours' (and then, back into the entity's after the transaction) in a transactional situation, the bank does not seem to care. Now I have not checked into why that is frankly, but I have dealt in enough of these transactions, and have kept in touch with enough clients through the years to know that the bank or any other agency has not come knocking at their doors.
I would suggest once you get past the one year of tenancy, deeding the property to another entity should be discussed with an attorney, but is something I am confident you can do in some capacity.