Also we had a laundry room door that was overall in good condition but had some normal wear and tear at the bottom, well they must of decided they didn't like the door so they stored it in the outdoor building all year and its covered in dirt and mildew.

Whenever a deal comes to me outside of my normal marketing channels I always ask the person with the deal 1) are you wholesaling this property and 2) If you are wholesaling the property are you direct to seller?

Normally this wouldn't bug me as I go in, fix the place up and find decent tenants for the area. 

We will add 2 more apartments and rehab the existing apartment and creating a 1000 sq foot of retail space.

If there's construction debris out front they have every right to step foot on your property to ask questions.

No it is not off grid it has consistent power, central air and heat, water, and all the appliances of a normal house.

I don't want to shoot myself in the foot by calling and complaining to his broker at this time. 

I have been just claiming it on my normal taxes. 1.

While they did a great job I think, they don't normally do rehab work nor will they probably want to in the future.

The fees for a normal straight exchange should be much less than a few thousand.  650 - 1000 is  a pretty normal range.