What would you charge to the security deposit for this damage to the wall? 

Jerry is now asking me for half security deposit after lease term expires.

And within this program is the Rapid Re-Housing program that can pay a lease up to 12 months in advance, pay double the security deposit, and pay the landlord a signing bonus of up to 3 times the monthly rent.  

Have him deposit the funds into my account and wait 3 months to get pre—approved, since I will have to submit my last two bank statements?

I would start looking for another place and let them know why you are not going to be renting and ask for your full deposit (if any given yet) to be returned as they have not lived up to the terms of the lease. 

That would give you a down deposit and likely better monthly cash flow without the need for a property manager.

Was the deposit received and did it clear.

Best case is take it out of the deposit if there is money left over.  

Since $100 was sent to payoff the first loan, now you get a check for $20 that you deposit into your bank account.Remember, the lien position is key..trying to figure out whether to refi includes determing your actual fees/costs to do the refi and how much interest are you saving per year. 

I have a lease coming up due and the lease agreement has 2 people (not related to one another) on the lease with an initial security deposit of $1000.