You also need a Qualified Intermediary to help facilitate the transaction.Here's some helpful info: 1031 Exchange

You could make the offer yourself, but it helps to have an intermediary.

Based on your situation, you'll probably fall under the standard Rule of Three or the 200% Rule.In any case, you MUST work with a Qualified Intermediary in order to execute a 1031.

To successfully complete a 1031 tax deferred exchange, there are specific requirements that must be met and clients must engage the services of a professional Qualified Intermediary.

For #6-IRC SEction 1031 exchange-would the fee for the 1031 intermediary go in there or is that the amount of funds I will carry over to the 1031?

The Qualified Intermediary would acquire and hold or "park" legal title to your replacement property and you would have the rest of your 180 day exchange period to complete the improvements to the replacement property.

So an investor, or intermediary, will usually choose a specific type of note and gain knowledge of all aspects.  

It seems like I have lined up the lawyer, and the intermediary butthe accountant I use is apparently not versed in 1031 exchanges.  

It can be structured so that it is part of the sale proceeds, can be released/dispersed through your escrow or closing agent and to your Qualified Intermediary.

Talk to the 1031 intermediary and accountant because I am not sure that short term "flipping" is justified in a 1031 scenario.