So it turns out that section 8 has different policies on a town per town basis. Luckily, the city I purchased the home in does not require a CO. Section 8 does their own inspection and this is all they require. I renovated all the work the city inspector asked me to fix on the temporary CO, but I did not close the permits. The permit office was a disaster as I got a different story on every visit without ever actually finding out what work was completed prior to me for which they wanted to open and close a permit for. Then the plumbing inspector came by just to tell me he was not going to actually look at the plumbing b/c I needed to open a permit for A/C unit and HVAC. This was after the office told me I should have the plumber come into close the plumbing permit while I work on the other permits. And, of course, the level of rudeness was on a level I have never experienced even at the most depressed government offices. I am a bit worried on if I will ever be able to close these permits now.