The company has already agreed to cover the lost rent as well as fix the damage but they are “conducting their investigation” so no actions have been taken to correct the issue yet. 

Every system you try will have flaws, or you may salivate over a feature that appears in other software.Some familiar names are mentioned frequently: Stessa, Apartments.com, RentRedi, TenantCloud, Innago, RentManager, Avail, Rentec Direct, Doorloop, etc.I recommend conducting thorough research on each app online to understand their offerings, pricing, etc.

You also won't get that much information on pricing of repairs and how to conduct them because your job would be to identify problems and then leave and let the buyer and seller figure out how to fix them.

We had no one available to conduct the pre-move out inspection on the 30th or 31st.

Instead of opening a new company, conduct business as "DBA" "Doing Business As""Tran Import Export LLC" DBA "Tran Real Estate LLC"This way there are no liabilities or tax consequences

James,I am in no way associated with Rex Reports, however I have used them since the mid 90's.I will agree there are times there are duplicates or reports which may contain errors.However, it is ultimately up to any and all investors, to conduct their own due diligence.

If I have an LLC in which I conduct my business, how do I actually take profits out of that LLC for personal use (i.e. pay myself) w/o piercing the corporate veil and losing my liability protection?

This is just an example, certainly conduct your own diligence but don't feel obligated to use the name brands (ie andersen, pella)..especially their entry level windows or those you will buy at a Home Depot or Lowes.

If any property owners have ever conducted such an audit, I'd love to hear about your experiences. 

If you end up putting in an offer and the seller accepts, just MAKE SURE you conduct a very thorough home inspection to try and catch potential deal breakers.Additionally, I would research the property to see if there are any outstanding liens on it.